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News 695 Publications 10 Members

Case-control study for risk factors for Q fever in southwest England and Northern Ireland.

Orr, Hj Christensen, H Smyth, B Dance, Da Carrington, D Paul, I Josh Stuart South West Q Fever Project, Group

Published in Eurosurveillance

Q fever (Coxiella burnetti) is thought to account for 1% (700 cases) of community acquired pneumonia in the United Kingdom each year, and can result in serious complications such as endocarditis. Although outbreaks have frequently been reported worldwide, the causes are often not clearly identified and there have been few studies of risk factors in...

Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans.

Fong, Y Bender, L Wang, W Susan Strome

Published in Science

The Maternal-Effect Sterile (MES) proteins are essential for germline viability in Caenorhabditis elegans. Here, we report that MES-4, a SET-domain protein, binds to the autosomes but not to the X chromosomes. MES-2, MES-3, and MES-6 are required to exclude MES-4 and markers of active chromatin from the X chromosomes. These findings strengthen the ...

Enhancement of beta-globin locus control region-mediated transactivation by mitogen-activated protein kinases through st...

Forsberg, Ec Zaboikina, Tn Versaw, Wk Ahn, Ng Bresnick, Eh

Published in Molecular and Cellular Biology

Activation of the mitogen-activated protein kinase (MAPK) pathway enhances long-range transactivation by the beta-globin locus control region (LCR) (W. K. Versaw, V. Blank, N. M. Andrews, and E. H. Bresnick, Proc. Natl. Acad. Sci. USA 95:8756-8760, 1998). The enhancement requires tandem recognition sites for the hematopoietic transcription factor N...

Conserved role of intragenic DNA methylation in regulating alternative promoters.

Maunakea, Ak Nagarajan, Rp Bilenky, M Ballinger, Tj D Souza, C Fouse, Sd Johnson, Be Hong, C Nielsen, C Zhao, Y ...

Published in Nature

Although it is known that the methylation of DNA in 5 promoters suppresses gene expression, the role of DNA methylation in gene bodies is unclear. In mammals, tissue- and cell type-specific methylation is present in a small percentage of 5 CpG island (CGI) promoters, whereas a far greater proportion occurs across gene bodies, coinciding with high...

An isoform of eIF4E is a component of germ granules and is required for spermatogenesis in C. elegans.

Amiri, A Keiper, Bd Kawasaki, I Fan, Y Kohara, Y Rhoads, Re Susan Strome

Published in Development

Control of gene expression at the translational level is crucial for many developmental processes. The mRNA cap-binding protein, eIF4E, is a key player in regulation of translation initiation; appropriate levels of eIF4E are essential for normal cell-cycle regulation and tissue differentiation. The observation that eIF4E levels are elevated during ...

Global predictions and tests of erythroid regulatory regions.

Hardison, Rc Chiaromonte, F Kolbe, D Wang, H Petrykowska, H Elnitski, L Yang, S Giardine, B Zhang, Y Riemer, C ...

Published in Cold Spring Harbor Symposia on Quantitative Biology

Ultraconserved elements in the human genome.

Bejerano, G Pheasant, M Makunin, I Stephen, S Kent, Wj Mattick, Js David Haussler

Published in Science

There are 481 segments longer than 200 base pairs (bp) that are absolutely conserved (100% identity with no insertions or deletions) between orthologous regions of the human, rat, and mouse genomes. Nearly all of these segments are also conserved in the chicken and dog genomes, with an average of 95 and 99% identity, respectively. Many are also sig...

Key stages in mammary gland development: the mammary end bud as a motile organ.

Lindsay Hinck Silberstein, Gb

Published in Breast Cancer Research

In the rodent, epithelial end buds define the tips of elongating mammary ducts. These highly motile structures undergo repeated dichotomous branching as they aggressively advance through fatty stroma and, turning to avoid other ducts, they finally cease growth leaving behind the open, tree-like framework on which secretory alveoli develop during pr...

Murine T cells reactive to type II collagen. II. Functional characterization.

Josh Stuart Tovey, J Chiller, Jm Hom, Jt

Published in The Journal of Immunology

DBA/1 mice immunized with native chick type II collagen (NcII) emulsified in complete Freund s adjuvant develop arthritis, whose underlying mechanisms are still undefined. As an initial step to studying the role of T cells in collagen-induced arthritis (CIA), we have established T cell lines specific to type II collagen. Characterizations of the an...

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Siepel, A Bejerano, G Pedersen, Js Hinrichs, As Hou, M Rosenbloom, K Clawson, H Spieth, J Hillier, Lw Richards, S ...

Published in Genome Research

We have conducted a comprehensive search for conserved elements in vertebrate genomes, using genome-wide multiple alignments of five vertebrate species (human, mouse, rat, chicken, and Fugu rubripes). Parallel searches have been performed with multiple alignments of four insect species (three species of Drosophila and Anopheles gambiae), two specie...

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