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Comparative and demographic analysis of orang-utan genomes. PDF available through Get Fulltext Research

Locke, Devin P Hillier, LaDeana W Warren, Wesley C Worley, Kim C Nazareth, Lynne V Muzny, Donna M Yang, Shiaw-Pyng Wang, Zhengyuan Chinwalla, Asif T Minx, Pat ...

Published in Nature

'Orang-utan' is derived from a Malay term meaning 'man of the forest' and aptly describes the southeast Asian great apes native to Sumatra and Borneo. The orang-utan species, Pongo abelii (Sumatran) and Pongo pygmaeus (Bornean), are the most phylogenetically distant great apes from humans, thereby providing an informative perspective on hominid evo...

An inverse relationship to germline transcription defines centromeric chromatin in C. elegans.

Gassmann, R Rechtsteiner, A Yuen, Kw Muroyama, A Egelhofer, T Gaydos, L Barron, F Maddox, P Essex, A Monen, J ...

Published in Nature

Centromeres are chromosomal loci that direct segregation of the genome during cell division. The histone H3 variant CENP-A (also known as CenH3) defines centromeres in monocentric organisms, which confine centromere activity to a discrete chromosomal region, and holocentric organisms, which distribute centromere activity along the chromosome length...

Comparative analysis of metazoan chromatin organization. PDF available through Get Fulltext Research

Ho, Joshua W K Jung, Youngsook L Liu, Tao Alver, Burak H Lee, Soohyun Ikegami, Kohta Sohn, Kyung-Ah Minoda, Aki Tolstorukov, Michael Y Appert, Alex ...

Published in Nature

Genome function is dynamically regulated in part by chromatin, which consists of the histones, non-histone proteins and RNA molecules that package DNA. Studies in Caenorhabditis elegans and Drosophila melanogaster have contributed substantially to our understanding of molecular mechanisms of genome function in humans, and have revealed conservation...

Vertebrate homologues of C. elegans UNC-5 are candidate netrin receptors.

Leonardo, Ed Lindsay Hinck Masu, M Keino-Masu, K Ackerman, Sl Tessier-Lavigne, M

Published in Nature

In the developing nervous system, migrating cells and axons are guided to their targets by cues in the extracellular environment. The netrins are a family of phylogenetically conserved guidance cues that can function as diffusible attractants and repellents for different classes of cells and axons. In vertebrates, insects and nematodes, members of ...

Replication stress is a potent driver of functional decline in ageing haematopoietic stem cells.

Flach, Johanna Bakker, Sietske T Mohrin, Mary Conroy, Pauline C Pietras, Eric M Reynaud, Damien Alvarez, Silvia Diolaiti, Morgan E Ugarte, Fernando Forsberg, E Camilla ...

Published in Nature

Haematopoietic stem cells (HSCs) self-renew for life, thereby making them one of the few blood cells that truly age. Paradoxically, although HSCs numerically expand with age, their functional activity declines over time, resulting in degraded blood production and impaired engraftment following transplantation. While many drivers of HSC ageing have ...

Comprehensive genomic characterization of squamous cell lung cancers. PDF available through Get Fulltext Research

Published in Nature

Lung squamous cell carcinoma is a common type of lung cancer, causing approximately 400,000 deaths per year worldwide. Genomic alterations in squamous cell lung cancers have not been comprehensively characterized, and no molecularly targeted agents have been specifically developed for its treatment. As part of The Cancer Genome Atlas, here we profi...

Comparative analyses of multi-species sequences from targeted genomic regions.

Jw, Thomas Jw, Touchman Rw, Blakesley Gg, Bouffard Sm, Beckstrom-Sternberg Eh, Margulies M, Blanchette Ac, Siepel Pj, Thomas Jc, Mcdowell ...

Published in Nature

The systematic comparison of genomic sequences from different organisms represents a central focus of contemporary genome analysis. Comparative analyses of vertebrate sequences can identify coding and conserved non-coding regions, including regulatory elements, and provide insight into the forces that have rendered modern-day genomes. As a compleme...

An RNA gene expressed during cortical development evolved rapidly in humans.

Pollard, Ks Salama, Sr Lambert, N Lambot, Ma Coppens, S Pedersen, Js Katzman, S King, B Onodera, C Siepel, A ...

Published in Nature

The developmental and evolutionary mechanisms behind the emergence of human-specific brain features remain largely unknown. However, the recent ability to compare our genome to that of our closest relative, the chimpanzee, provides new avenues to link genetic and phenotypic changes in the evolution of the human brain. We devised a ranking of region...

Integration of cytogenetic landmarks into the draft sequence of the human genome.

Cheung, Vg Nowak, N Jang, W Kirsch, Ir Zhao, S Chen, Xn Furey, Ts Kim, Uj Kuo, Wl Olivier, M ...

Published in Nature

We have placed 7,600 cytogenetically defined landmarks on the draft sequence of the human genome to help with the characterization of genes altered by gross chromosomal aberrations that cause human disease. The landmarks are large-insert clones mapped to chromosome bands by fluorescence in situ hybridization. Each clone contains a sequence tag that...

Integrated genomic analyses of ovarian carcinoma. PDF available through Get Fulltext Research

Published in Nature

A catalogue of molecular aberrations that cause ovarian cancer is critical for developing and deploying therapies that will improve patients' lives. The Cancer Genome Atlas project has analysed messenger RNA expression, microRNA expression, promoter methylation and DNA copy number in 489 high-grade serous ovarian adenocarcinomas and the DNA sequenc...

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