Locke, Devin P Hillier, LaDeana W Warren, Wesley C Worley, Kim C Nazareth, Lynne V Muzny, Donna M Yang, Shiaw-Pyng Wang, Zhengyuan Chinwalla, Asif T Minx, Pat
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Published in
Nature
'Orang-utan' is derived from a Malay term meaning 'man of the forest' and aptly describes the southeast Asian great apes native to Sumatra and Borneo. The orang-utan species, Pongo abelii (Sumatran) and Pongo pygmaeus (Bornean), are the most phylogenetically distant great apes from humans, thereby providing an informative perspective on hominid evo...
Gassmann, R Rechtsteiner, A Yuen, Kw Muroyama, A Egelhofer, T Gaydos, L Barron, F Maddox, P Essex, A Monen, J
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Published in
Nature
Centromeres are chromosomal loci that direct segregation of the genome during cell division. The histone H3 variant CENP-A (also known as CenH3) defines centromeres in monocentric organisms, which confine centromere activity to a discrete chromosomal region, and holocentric organisms, which distribute centromere activity along the chromosome length...
Ho, Joshua W K Jung, Youngsook L Liu, Tao Alver, Burak H Lee, Soohyun Ikegami, Kohta Sohn, Kyung-Ah Minoda, Aki Tolstorukov, Michael Y Appert, Alex
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Published in
Nature
Genome function is dynamically regulated in part by chromatin, which consists of the histones, non-histone proteins and RNA molecules that package DNA. Studies in Caenorhabditis elegans and Drosophila melanogaster have contributed substantially to our understanding of molecular mechanisms of genome function in humans, and have revealed conservation...
Leonardo, Ed Lindsay Hinck Masu, M Keino-Masu, K Ackerman, Sl Tessier-Lavigne, M
Published in
Nature
In the developing nervous system, migrating cells and axons are guided to their targets by cues in the extracellular environment. The netrins are a family of phylogenetically conserved guidance cues that can function as diffusible attractants and repellents for different classes of cells and axons. In vertebrates, insects and nematodes, members of ...
Flach, Johanna Bakker, Sietske T Mohrin, Mary Conroy, Pauline C Pietras, Eric M Reynaud, Damien Alvarez, Silvia Diolaiti, Morgan E Ugarte, Fernando Forsberg, E Camilla
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Published in
Nature
Haematopoietic stem cells (HSCs) self-renew for life, thereby making them one of the few blood cells that truly age. Paradoxically, although HSCs numerically expand with age, their functional activity declines over time, resulting in degraded blood production and impaired engraftment following transplantation. While many drivers of HSC ageing have ...
Published in
Nature
Lung squamous cell carcinoma is a common type of lung cancer, causing approximately 400,000 deaths per year worldwide. Genomic alterations in squamous cell lung cancers have not been comprehensively characterized, and no molecularly targeted agents have been specifically developed for its treatment. As part of The Cancer Genome Atlas, here we profi...
Jw, Thomas Jw, Touchman Rw, Blakesley Gg, Bouffard Sm, Beckstrom-Sternberg Eh, Margulies M, Blanchette Ac, Siepel Pj, Thomas Jc, Mcdowell
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Published in
Nature
The systematic comparison of genomic sequences from different organisms represents a central focus of contemporary genome analysis. Comparative analyses of vertebrate sequences can identify coding and conserved non-coding regions, including regulatory elements, and provide insight into the forces that have rendered modern-day genomes. As a compleme...
Pollard, Ks Salama, Sr Lambert, N Lambot, Ma Coppens, S Pedersen, Js Katzman, S King, B Onodera, C Siepel, A
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Published in
Nature
The developmental and evolutionary mechanisms behind the emergence of human-specific brain features remain largely unknown. However, the recent ability to compare our genome to that of our closest relative, the chimpanzee, provides new avenues to link genetic and phenotypic changes in the evolution of the human brain. We devised a ranking of region...
Cheung, Vg Nowak, N Jang, W Kirsch, Ir Zhao, S Chen, Xn Furey, Ts Kim, Uj Kuo, Wl Olivier, M
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Published in
Nature
We have placed 7,600 cytogenetically defined landmarks on the draft sequence of the human genome to help with the characterization of genes altered by gross chromosomal aberrations that cause human disease. The landmarks are large-insert clones mapped to chromosome bands by fluorescence in situ hybridization. Each clone contains a sequence tag that...
Published in
Nature
A catalogue of molecular aberrations that cause ovarian cancer is critical for developing and deploying therapies that will improve patients' lives. The Cancer Genome Atlas project has analysed messenger RNA expression, microRNA expression, promoter methylation and DNA copy number in 489 high-grade serous ovarian adenocarcinomas and the DNA sequenc...